linkBioNetSamples: Link Two samples Inside a Node with Quadratic Bezier Curve

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Draw a quadratic Bezier curve line between two samples inside of a node. bioNetCorcos layout must be initialized first.

Usage

    linkBioNetSamples(nodeIndex, fromSample, toSample, outer, plotColors)

Arguments

nodeIndex	non-negative integer, the node on which link line is drawn
fromSample	non-negative integer, the first sample to be linked
toSample	non-negative integer, the second sample to be linked
outer	non-negative numeric, the start and end of link line relative to node center
plotColors	character vector, color for the link line (ribbon)

Value

None

Author(s)

Henry Zhang

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]

    bioNet <- bc3net(expr)
    initializeBioNetCircos(bioNet)
    showBioNetNodesLayout()

    linkBioNetSamples(nodeIndex=2, fromSample=10, toSample=20, outer=0.9, 
            plotColors="red")

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.