RNASeqDemoData: RNASeq Demo Data Set

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

A data frame with RNASeq read counts of 26 genes in 60 samples. Used for heatmap plot on caOimcsV bioNetCircos layout and bioMatirx layout after transformed to log2 values

Usage

data("RNASeqDemoData")

Format

A data frame with 26 observations on the following 61 variables.

GeneSymbol

a factor with levels A1BG ADAMTS13 AMIGO3 ARMCX6 BCO2 C17orf68 CBLN4 CDKN3 CFP COL13A1 COL15A1 CSRNP1 CXCL12 DBH DNA2 ECM1 ESM1 FAM20A FCN3 GJB2 HOXD9 KIF12 LEPREL1 LIFR LILRB5 LOC222699 LOC441455 LYVE1 MOBKL1A MT1F NPM3 OLFML3 PCDHB7 PLVAP PRICKLE4 PTH1R RCAN1 RND3 RNF125 SEMA3F SIRT5 SLC26A6 SPACA5 TKTL1 TOMM40L UBE2J2 ZNF273

TCGA.BC.A216.Normal

a numeric vector

TCGA.BD.A2L6.Normal

a numeric vector

TCGA.BD.A3EP.Normal

a numeric vector

TCGA.DD.A113.Normal

a numeric vector

TCGA.DD.A114.Normal

a numeric vector

TCGA.DD.A118.Normal

a numeric vector

TCGA.DD.A119.Normal

a numeric vector

TCGA.DD.A11A.Normal

a numeric vector

TCGA.DD.A11B.Normal

a numeric vector

TCGA.DD.A11C.Normal

a numeric vector

TCGA.DD.A11D.Normal

a numeric vector

TCGA.DD.A1EB.Normal

a numeric vector

TCGA.DD.A1EC.Normal

a numeric vector

TCGA.DD.A1EG.Normal

a numeric vector

TCGA.DD.A1EH.Normal

a numeric vector

TCGA.DD.A1EI.Normal

a numeric vector

TCGA.DD.A1EJ.Normal

a numeric vector

TCGA.DD.A1EL.Normal

a numeric vector

TCGA.DD.A39V.Normal

a numeric vector

TCGA.DD.A39W.Normal

a numeric vector

TCGA.DD.A39X.Normal

a numeric vector

TCGA.DD.A39Z.Normal

a numeric vector

TCGA.DD.A3A1.Normal

a numeric vector

TCGA.DD.A3A2.Normal

a numeric vector

TCGA.DD.A3A3.Normal

a numeric vector

TCGA.EP.A12J.Normal

a numeric vector

TCGA.EP.A26S.Normal

a numeric vector

TCGA.ES.A2HT.Normal

a numeric vector

TCGA.FV.A23B.Normal

a numeric vector

TCGA.FV.A2QR.Normal

a numeric vector

TCGA.BC.A216.Tumor

a numeric vector

TCGA.BD.A2L6.Tumor

a numeric vector

TCGA.BD.A3EP.Tumor

a numeric vector

TCGA.DD.A113.Tumor

a numeric vector

TCGA.DD.A114.Tumor

a numeric vector

TCGA.DD.A118.Tumor

a numeric vector

TCGA.DD.A119.Tumor

a numeric vector

TCGA.DD.A11A.Tumor

a numeric vector

TCGA.DD.A11B.Tumor

a numeric vector

TCGA.DD.A11C.Tumor

a numeric vector

TCGA.DD.A11D.Tumor

a numeric vector

TCGA.DD.A1EB.Tumor

a numeric vector

TCGA.DD.A1EC.Tumor

a numeric vector

TCGA.DD.A1EG.Tumor

a numeric vector

TCGA.DD.A1EH.Tumor

a numeric vector

TCGA.DD.A1EI.Tumor

a numeric vector

TCGA.DD.A1EJ.Tumor

a numeric vector

TCGA.DD.A1EL.Tumor

a numeric vector

TCGA.DD.A39V.Tumor

a numeric vector

TCGA.DD.A39W.Tumor

a numeric vector

TCGA.DD.A39X.Tumor

a numeric vector

TCGA.DD.A39Z.Tumor

a numeric vector

TCGA.DD.A3A1.Tumor

a numeric vector

TCGA.DD.A3A2.Tumor

a numeric vector

TCGA.DD.A3A3.Tumor

a numeric vector

TCGA.EP.A12J.Tumor

a numeric vector

TCGA.EP.A26S.Tumor

a numeric vector

TCGA.ES.A2HT.Tumor

a numeric vector

TCGA.FV.A23B.Tumor

a numeric vector

TCGA.FV.A2QR.Tumor

a numeric vector

Value

None

Examples

    data(RNASeqDemoData)

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.