plotBioNetLines: Line Plot on caOmicsV bioNetCircos Layout

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Line plot on caOmicsv bioNetCircos layout. This method plots one track of line for every node. bionetCircos layout and graphic device must be initialized first.

Usage

    plotBioNetLines(dataValues, outer, inner, maxValue=NULL, minValue=NULL, 
            plotColors=rep("black", ncol(dataValues)))

Arguments

dataValues	numeric matrix of plot data
outer	non-negative numeric, the outside boundary of plot area from node center
inner	non-negative numeric, the inside boundary of plot area from node center
maxValue	numeric, the biggest value of plot data
minValue	numeric, the smallest value of plot data
plotColors	character vector or vector of R specification, colours for each sample

Value

None

Author(s)

Henry Zhang

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]
    bioNet <- bc3net(expr)

    initializeBioNetCircos(bioNet, totalSamples=60)
    showBioNetNodesLayout()
    plotBioNetLines(expr, outer=13, inner=2)

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.