findTissueBorder: Classifies visium spots according to its position relative to...

In iaaka/visutils: QC, analyse and visualize visium

Classifies visium spots according to its position relative to tissue slice border

Description

Classifies visium spots according to its position relative to tissue slice border

Usage

findTissueBorder(rc, image.name = NULL)

Arguments

rc	either seurat object or seu@images[.]@coordinates dataframe

Value

list with two elements:

1. augmented rc dataframe with spot coordinates. Following columns added: tissue.piece - number of tissue piece is.border - specifies whether spot is tissue border border.inx - consecutive number of border spots

2. nj - list of spot neighbors

iaaka/visutils documentation built on Jan. 17, 2025, 11:29 p.m.