mergeSpots: Merge grouped spots
In iaaka/visutils: QC, analyse and visualize visium
mergeSpots R Documentation
Merge grouped spots
Description
Merge grouped spots
Usage
mergeSpots(v, gr, image.name = NULL)
Arguments
v
Seurat object
gr
output of getCenters
Value
Seurat object with merged spots
Examples
c2 = getCenters(v2,to.merge = v2$nCount_Spatial<500)
v2m = mergeSpots(v2,c2)
v2m@meta.data[1:20,]
plotVisium(v2m,v2m$nCount_Spatial,zfun = log1p,cex=v2m$cex)
iaaka/visutils documentation built on Jan. 17, 2025, 11:29 p.m.
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| mergeSpots | R Documentation |
Merge grouped spots
Description
Merge grouped spots
Usage
mergeSpots(v, gr, image.name = NULL)
Arguments
v |
Seurat object |
gr |
output of getCenters |
Value
Seurat object with merged spots
Examples
c2 = getCenters(v2,to.merge = v2$nCount_Spatial<500)
v2m = mergeSpots(v2,c2)
v2m@meta.data[1:20,]
plotVisium(v2m,v2m$nCount_Spatial,zfun = log1p,cex=v2m$cex)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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