plotNMFCons: Plots NMF clustering, silhouette and consensuse clustering

In iaaka/visutils: QC, analyse and visualize visium

Plots NMF clustering, silhouette and consensuse clustering

Description

Plots NMF clustering, silhouette and consensuse clustering

Usage

plotNMFCons(
  coefs,
  cons,
  clcols = NULL,
  max.cex = 4.5/14 * 8,
  colfun = function(x) num2col(x, c("blue", "gray", "orange", "violet", "black"), minx =
    0, maxx = 1),
  title = "",
  ylab.cex = 1,
  xlab.cex = 1
)

Arguments

coefs	coef matrix from NMF
cons	conensus matrix
clcols	colors for clusters
max.cex	dot size for dotPlot
colfun	color function to be used in dotPlot
title	title for whole plot
ylab.cex, xlab.cex	sizes of axis labels

Value

list of clusters, colors and silhouette

iaaka/visutils documentation built on Jan. 17, 2025, 11:29 p.m.