myLoad10X_Spatial: Load spaceranger results

In iaaka/visutils: QC, analyse and visualize visium

Load spaceranger results

Description

Wrapper for Load10X_Spatial

Usage

myLoad10X_Spatial(
  data.dir,
  filter.matrix = TRUE,
  ens_id = TRUE,
  slice = "slice1",
  ...
)

Arguments

data.dir	path to the folder with h5 files
filter.matrix	logical, specifies whether only tissue spots should be loaded
ens_id	logical, specifies whetehr Ensambl IDs should be used to identify genes (instead of gene names)
...	other parameters to Load10X_Spatial

Value

Seurat object

iaaka/visutils documentation built on Jan. 17, 2025, 11:29 p.m.