ISpatialDimPlot: Visualize clusters spatially and interactively

In ibseq/scs-analysis: Tools for Single Cell Genomics

Description

Visualize clusters spatially and interactively

Usage

ISpatialDimPlot(object, image = NULL, group.by = NULL, alpha = c(0.3, 1))

Arguments

object	Seurat object
image	Name of the image to use in the plot
group.by	Name of one or more metadata columns to group (color) cells by (for example, orig.ident); pass 'ident' to group by identity class
alpha	Controls opacity of spots. Provide as a vector specifying the min and max

Value

Returns final plot as a ggplot object

ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.