ISpatialFeaturePlot: Visualize features spatially and interactively
In ibseq/scs-analysis: Tools for Single Cell Genomics
Description
Usage
Arguments
Value
View source: R/visualization.R
Description
Visualize features spatially and interactively
Usage
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ISpatialFeaturePlot(
object,
feature,
image = NULL,
slot = "data",
alpha = c(0.1, 1)
)
Arguments
object
Seurat object
feature
Feature to visualize
image
Name of the image to use in the plot
slot
Which slot to pull expression data from?
alpha
Controls opacity of spots. Provide as a vector specifying the
min and max
Value
Returns final plot as a ggplot object
ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.
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Description Usage Arguments Value
View source: R/visualization.R
Description
Visualize features spatially and interactively
Usage
1 2 3 4 5 6 7 | ISpatialFeaturePlot(
object,
feature,
image = NULL,
slot = "data",
alpha = c(0.1, 1)
)
|
Arguments
object |
Seurat object |
feature |
Feature to visualize |
image |
Name of the image to use in the plot |
slot |
Which slot to pull expression data from? |
alpha |
Controls opacity of spots. Provide as a vector specifying the min and max |
Value
Returns final plot as a ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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