Files in ibsquare/MoonlightR
Identify oncogenes and tumor suppressor genes from omics data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/DPA.R
R/FEA.R
R/GRN.R
R/GSEA.R
R/LPA.R
R/MoonlightR.R
R/PRA.R
R/URA.R
R/getDataGEO.R
R/getDataTCGA.R
R/moonlight.R
R/plotCircos.R
R/plotFEA.R
R/plotNetworkHive.R
R/plotURA.R
README.md
appveyor.yml
data/DEGsmatrix.rda
data/DiseaseList.rda
data/EAGenes.rda
data/GDCprojects.rda
data/GEO_TCGAtab.rda
data/dataFilt.rda
data/dataGRN.rda
data/dataURA.rda
data/datalist
data/geneInfo.rda
data/knownDriverGenes.rda
data/listMoonlight.rda
data/tabGrowBlock.rda
inst/CITATION
man/DEGsmatrix.Rd
man/DPA.Rd
man/DiseaseList.Rd
man/EAGenes.Rd
man/FEA.Rd
man/GDCprojects.Rd
man/GEO_TCGAtab.Rd
man/GRN.Rd
man/GSEA.Rd
man/LPA.Rd
man/MoonlightR.Rd
man/PRA.Rd
man/URA.Rd
man/dataFilt.Rd
man/dataGRN.Rd
man/dataURA.Rd
man/geneInfo.Rd
man/getDataGEO.Rd
man/getDataTCGA.Rd
man/knownDriverGenes.Rd
man/listMoonlight.Rd
man/moonlight.Rd
man/plotCircos.Rd
man/plotFEA.Rd
man/plotNetworkHive.Rd
man/plotURA.Rd
man/tabGrowBlock.Rd
vignettes/Case1_URA.png
vignettes/DEGs_volcano.png
vignettes/FEAplot.png
vignettes/GSEAplot.png
vignettes/Moonlight.Rmd
vignettes/Moonlight_Pipeline.png
vignettes/URAplot.png
vignettes/circos_ocg_tsg_ncancer5.png
vignettes/circos_ocg_tsg_stages.png
vignettes/networkHive.png
