DPA: DPA

View source: R/DPA.R

DPAR Documentation

DPA

Description

This function carries out the differential phenotypes analysis

Usage

DPA(
  dataType,
  dataFilt,
  dataConsortium = "TCGA",
  fdr.cut = 0.01,
  logFC.cut = 1,
  diffmean.cut = 0.25,
  samplesType,
  colDescription,
  gset,
  gsetFile = "gsetFile.RData"
)

Arguments

dataType

selected

dataFilt

obtained from getDataTCGA

dataConsortium

is TCGA or GEO, default TCGA

fdr.cut

is a threshold to filter DEGs according their p-value corrected

logFC.cut

is a threshold to filter DEGs according their logFC

diffmean.cut

diffmean.cut for DMR

samplesType

samplesType

colDescription

colDescription

gset

gset

gsetFile

gsetFile

Value

result matrix from differential phenotype analysis

Examples

dataDEGs <- DPA(dataFilt = dataFilt, dataType = "Gene expression")

ibsquare/MoonlightR documentation built on Aug. 21, 2023, 7:16 a.m.