URA: URA Upstream Regulator Analysis

View source: R/URA.R

URAR Documentation

URA Upstream Regulator Analysis

Description

This function carries out the upstream regulator analysis

Usage

URA(dataGRN, DEGsmatrix, BPname, nCores = 1)

Arguments

dataGRN

output GNR function

DEGsmatrix

output DPA function

BPname

biological processes

nCores

number of cores to use

Value

an adjacent matrix

Examples

dataDEGs <- DEGsmatrix
dataGRN <- GRN(TFs = rownames(dataDEGs)[1:100],
DEGsmatrix = dataDEGs,
DiffGenes = TRUE,
normCounts = dataFilt)
dataURA <-URA(dataGRN = dataGRN,
DEGsmatrix = dataDEGs,
BPname = c("apoptosis",
"proliferation of cells"))

ibsquare/MoonlightR documentation built on May 19, 2024, 6:16 a.m.