LPA: LPA

LPAR Documentation

LPA

Description

This function carries out the literature phenotype analysis (LPA)

Usage

LPA(dataDEGs, BP, BPlist)

Arguments

dataDEGs

is output from DEA

BP

is biological process

BPlist

is list of genes annotated in BP

Value

table with number of pubmed that affects, increase or decrase genes annotated in BP

Examples

data(DEGsmatrix)
BPselected <- c("apoptosis")
BPannotations <- DiseaseList[[match(BPselected, names(DiseaseList))]]$ID

ibsquare/MoonlightR documentation built on May 19, 2024, 6:16 a.m.