Description Usage Arguments Value Author(s) References
View source: R/blastInternals.R
Seach nucleotide sequences in a nucleotide database.
1 |
genome |
The query. A nucleotide fasta file. |
db |
The subject. A nucleotide blast database as created by makeblastdb. |
outdir |
Where to put the blast output file. |
n_threads |
|
eval |
Evalue reporting threshold. |
The path to the blastn output. The blastn output is written in the
following format as specified by -outfmt
option in Blast+ program:
-outfmt '6 qseqid sseqid pident gaps length slen evalue qseq'
.
Ignacio Ferres
Altschul, Gish, Miller, Myers & Lipman. (1990) "Basic local alignment search tool." J. Mol. Biol. 215:403-410.
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