downloadPubmlst_profile: Download the Profile for a Given MLST Scheme
In iferres/quickMLST: Quick Multi Locus Sequence Typing Analisys
Description
Usage
Arguments
Value
Author(s)
References
View source: R/pubmlstInterface.R
Description
This function takes a genus, as returned by listPubmlst_orgs,
and a mlst scheme as an integer and downloads the profile file for
the given genus and mlst scheme, in tsv format.
Usage
1
downloadPubmlst_profile(org = "leptospira", scheme = 1L, dir = ".")
Arguments
org
character. A genus (lowercase).
scheme
An integer specifiying the scheme number.
dir
Where to put the tsv profile file.
Value
A vector of paths to the downloaded tsv file.
Author(s)
Ignacio Ferres
References
Jolley KA, Bray JE, Maiden MCJ. A RESTful application programming
interface for the PubMLST molecular typing and genome databases. Database:
The Journal of Biological Databases and Curation. 2017;2017:bax060.
doi:10.1093/database/bax060.
iferres/quickMLST documentation built on Dec. 22, 2020, 5:10 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/pubmlstInterface.R
Description
This function takes a genus, as returned by listPubmlst_orgs,
and a mlst scheme as an integer and downloads the profile file for
the given genus and mlst scheme, in tsv format.
Usage
1 | downloadPubmlst_profile(org = "leptospira", scheme = 1L, dir = ".")
|
Arguments
org |
|
scheme |
An |
dir |
Where to put the tsv profile file. |
Value
A vector of paths to the downloaded tsv file.
Author(s)
Ignacio Ferres
References
Jolley KA, Bray JE, Maiden MCJ. A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database: The Journal of Biological Databases and Curation. 2017;2017:bax060. doi:10.1093/database/bax060.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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