Description Usage Arguments Value Author(s) References
View source: R/pubmlstInterface.R
This function takes a genus, as returned by listPubmlst_orgs,
and a mlst scheme as an integer
and downloads the profile file for
the given genus and mlst scheme, in tsv format.
1 | downloadPubmlst_profile(org = "leptospira", scheme = 1L, dir = ".")
|
org |
|
scheme |
An |
dir |
Where to put the tsv profile file. |
A vector of paths to the downloaded tsv file.
Ignacio Ferres
Jolley KA, Bray JE, Maiden MCJ. A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database: The Journal of Biological Databases and Curation. 2017;2017:bax060. doi:10.1093/database/bax060.
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