listPubmlst_schemes: List Available MLST Schemes for a Given Genus
In iferres/quickMLST: Quick Multi Locus Sequence Typing Analisys
Description
Usage
Arguments
Value
Author(s)
References
View source: R/pubmlstInterface.R
Description
Takes a single genus as returned by listPubmlst_orgs,
and lists the available mlst schemes for that genus in pubmlst.org .
Usage
1
listPubmlst_schemes(org = "leptospira")
Arguments
org
character. A genus (lowercase).
Value
A list with genes for each available mlst scheme.
Author(s)
Ignacio Ferres
References
Jolley KA, Bray JE, Maiden MCJ. A RESTful application programming
interface for the PubMLST molecular typing and genome databases. Database:
The Journal of Biological Databases and Curation. 2017;2017:bax060.
doi:10.1093/database/bax060.
iferres/quickMLST documentation built on Dec. 22, 2020, 5:10 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/pubmlstInterface.R
Description
Takes a single genus as returned by listPubmlst_orgs, and lists the available mlst schemes for that genus in pubmlst.org .
Usage
1 | listPubmlst_schemes(org = "leptospira")
|
Arguments
org |
|
Value
A list with genes for each available mlst scheme.
Author(s)
Ignacio Ferres
References
Jolley KA, Bray JE, Maiden MCJ. A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database: The Journal of Biological Databases and Curation. 2017;2017:bax060. doi:10.1093/database/bax060.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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