apply.symm: Apply function to every pair of data frames from a list.

In imminfo/tcr: Advanced Data Analysis of Immune Receptor Repertoires

Description

Apply the given function to every pair in the given datalist. Function either symmetrical (i.e. fun(x,y) == fun(y,x)) or assymmetrical (i.e. fun(x,y) != fun(y,x)).

Usage

apply.symm(.datalist, .fun, ..., .diag = NA, .verbose = T)

apply.asymm(.datalist, .fun, ..., .diag = NA, .verbose = T)

Arguments

.datalist	List with some data.frames.
.fun	Function to apply, which return basic class value.
...	Arguments passsed to .fun.
.diag	Either NA for NA or something else != NULL for .fun(x,x).
.verbose	if T then output a progress bar.

Value

Matrix with values M[i,j] = fun(datalist[i], datalist[j])

Examples

## Not run: 
# equivalent to intersectClonesets(immdata, 'a0e')
apply.symm(immdata, intersectClonesets, .type = 'a0e')

## End(Not run)

imminfo/tcr documentation built on June 13, 2020, 7:01 a.m.