cloneset.stats: MiTCR data frame basic statistics.

In imminfo/tcr: Advanced Data Analysis of Immune Receptor Repertoires

Description

Compute basic statistics of TCR repertoires: number of clones, number of clonotypes, number of in-frame and out-of-frame sequences, summary of "Read.count", "Umi.count" and other.

Usage

cloneset.stats(.data, .head = 0)

repseq.stats(.data, .head = 0)

Arguments

.data	tcR data frames or a list with tcR data frames.
.head	How many top clones use to comput summary.

Value

if .data is a data frame, than numeric vector with statistics. If .data is a list with data frames, than matrix with statistics for each data frame.

Examples

## Not run: 
# Compute basic statistics of list with data frames.
cloneset.stats(immdata)
repseq.stats(immdata)

## End(Not run)

imminfo/tcr documentation built on June 13, 2020, 7:01 a.m.