convergence.index: Compute convergence characteristics of repertoires.
In imminfo/tcr: Advanced Data Analysis of Immune Receptor Repertoires

Get a number of rows with similar aminoacid sequence but different nucleotide sequence.

convergence.index(
  .alpha,
  .beta,
  .col.nuc = "CDR3.nucleotide.sequence",
  .col.aa = "CDR3.amino.acid.sequence"
)

`.alpha`	Either data frame with columns `.col.nuc` and `.col.aa` or list with such data frames.
`.beta`	Either data frame or none.
`.col.nuc`	Name of the column with nucleotide sequences.
`.col.aa`	Name of the columnw ith aminoacid sequences.

If .alpha is data frame, than integer vector of length 2 with . If .alpha is a list than matrix M with M[i,j] = convergence.index(.alpha[[i]], .alpha[[j]]).

imminfo/tcr documentation built on June 13, 2020, 7:01 a.m.