isglobal-brge/MADloy: Package to detect mosaic LOY from SNP array data

This packages is a suit of functions to perform association analysis of mosaic LOY and quantitative or continuous outcomes. It uses SNP array data in pennCNV format (e.g. having snp_name, chromosome, position, LRR, BAF and genotype). There are functions to perform quality control of samples, functions to process raw data and extract the LRR and BAF information of required genomic regions, and a function to perform calling based on Negative Inverse Gaussian distribution that properly fits LRR data.

Getting started

Package details

AuthorMarcos Lopez-Sanchez and Juan R Gonzalez
MaintainerJuan R Gonzalez <[email protected]>
LicenseGPL (>= 2)
URL and
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
isglobal-brge/MADloy documentation built on June 11, 2017, 2:40 a.m.