This packages is a suit of functions to perform association analysis of mosaic LOY and quantitative or continuous outcomes. It uses SNP array data in pennCNV format (e.g. having snp_name, chromosome, position, LRR, BAF and genotype). There are functions to perform quality control of samples, functions to process raw data and extract the LRR and BAF information of required genomic regions, and a function to perform calling based on Negative Inverse Gaussian distribution that properly fits LRR data.
|Author||Marcos Lopez-Sanchez and Juan R Gonzalez|
|Maintainer||Juan R Gonzalez <[email protected]>|
|License||GPL (>= 2)|
|URL||http://www.creal.cat/brge and http://www.creal.cat/jrgonzalez/software.htm|
|Package repository||View on GitHub|
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