Man pages for isglobal-brge/MADloy
Package to detect mosaic LOY from SNP array data

BLCAresTrimmed median LRR values for autosomal and male-specific Y...
checkBdevCheck the B deviation values in PAR1 and PAR2 regions to...
checkSexCheck sex for SNP array samples
getLOYDetection algorithm to detect Loss of Y events in MADloy or...
getProbGet probability matrix of three status (LOY, normal, XYY)
getSummaryGet summary values from MADseqLOY or MADloy objects
madloyCheck the mean LRR values in msY region to detect Loss of Y...
MADloyHapMapAllMedian chr21, chr22 and chrY:2694521-59034049 (hg19/GRCh37)...
MADloyHapMapMaleMedian chr21, chr22 and chrY:2694521-59034049 (hg19/GRCh37)...
madseqloyCheck the loss of Y events in a given folder of .bam files
plotIndLRRPlots the SNP LRR data of an individual
plotIndSNPPlots the SNP data of an individual
plotNIGPlot of LRR cummulative distribution function (CDF) of two...
PRADresTrimmed median LRR values for autosomal and male-specific Y...
PRADresBdevTrimmed median LRR values and Bdev values for PAR1, PAR2, p...
processBdevMADProcess MAD file to obtain Bdev
processMADProcess MAD file
isglobal-brge/MADloy documentation built on June 11, 2017, 2:40 a.m.