checkBdev | Check the B deviation values in PAR1 and PAR2 regions to... |
checkSex | Check sex for SNP array samples |
getLOY | Detection algorithm to detect Loss of Y events in MADloy data |
getProb | Get probability matrix of three status (LOY, normal, XYY) |
getSamples | Return the samples with the chosen classification |
getSummary | Get summary values from a MADloy object |
madloy | Check the mean LRR values in msY region to detect Loss of Y... |
plotIndLRR | Plots the SNP LRR data of an individual |
plotIndSNP | Plots the SNP data of chromosome Y for an individual |
plotIndSNPX | Plots the SNP data of chromosome X for an individual |
plot.MADloy | Plot of MADloy object |
processBdevMAD | Process MAD file to obtain Bdev |
processMAD | Process MAD file |
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