getLOY: Detection algorithm to detect Loss of Y events in MADloy or...

Description Usage Arguments Value Examples

View source: R/getLOY.R

Description

Detection algorithm to detect Loss of Y events in MADloy or MADseqLOY data

Usage

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getLOY(object, offset, pval.sig, k, cutoff, ...)

Arguments

object

A MADloy or MADseqLOY object.

offset

Offset value of SNP array data in the LRR of chromosome Y. That is, value to guarantee that mean LRR at chrmosome Y is centered at 0. Default 0 since LRR at m-LRR region is expected to be centered at O.

pval.sig

pval.sig p-value treshold to be used in the classification test.

k

Number of groups. Only necessary in NGS data.

cutoff

cutoff value. Only necessari in NGS data.

...

Other parameters.

Value

An object of class "LOY" that summarizes the LOY events detected in the analyzed samples

Examples

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## Not run: 
getLOY(resMADseqLOY)
getLOY(resMADloy)
## End(Not run)

isglobal-brge/MADloy documentation built on June 11, 2017, 2:40 a.m.