Files in isglobal-brge/MADloy
Package to detect mosaic LOY from SNP array data
.gitignore
DESCRIPTION
NAMESPACE
R/MADloy.R
R/checkBdev.R
R/checkSex.R
R/getLOY.R
R/getProb.R
R/getSamples.R
R/getSummary.R
R/plot.LOY.R
R/plot.MADloy.R
R/plot.checkSex.R
R/plotIndLRR.R
R/plotIndSNP.R
R/plotIndSNPX.R
R/print.LOY.R
R/print.MADloy.R
R/print.MADloyBdev.R
R/print.checkSex.R
R/processBdevMAD.R
R/processMAD.R
R/utils.R
README.md
inst/extdata/Rplot001.png
inst/extdata/TCGA-CF-A3MI-01A.txt
inst/extdata/TCGA-E7-A6ME-01A.txt
inst/extdata/data-raw/HapMap_SNP_Data.R
inst/extdata/data-raw/HapMap_SNP_Data_2.R
inst/extdata/rawData/Sample1.txt
inst/extdata/rawData/Sample2.txt
inst/extdata/references/GRCh38.chrom.sizes
inst/extdata/references/GRCh38.par.regions
inst/extdata/references/hg18.chrom.sizes
inst/extdata/references/hg18.par.regions
inst/extdata/references/hg19.chrom.sizes
inst/extdata/references/hg19.par.regions
inst/extdata/vignetteplots/TCGA-G9-6329-01A.png
inst/extdata/vignetteplots/TCGA-G9-6362-01A.png
inst/extdata/vignetteplots/TCGA-G9-6362-11A.png
inst/extdata/vignetteplots/TCGA-G9-A9S7-01A.png
inst/extdata/vignetteplots/TCGA-HC-7740-01B.png
inst/extdata/vignetteplots/TCGA-HC-7742-10A.png
inst/extdata/vignetteplots/TCGA-HC-7747-10A.png
inst/extdata/vignetteplots/TCGA-HC-7752-10A.png
inst/extdata/vignetteplots/TCGA-HC-8258-01B.png
inst/extdata/vignetteplots/TCGA-HC-A9TE-01A.png
inst/extdata/vignetteplots/TCGA-J4-AATZ-01A.png
inst/extdata/vignetteplots/TCGA-J9-A52E-10A.png
inst/extdata/vignetteplots/TCGA-J9-A8CP-01A.png
inst/extdata/vignetteplots/TCGA-KK-A7B0-11A.png
inst/extdata/vignetteplots/TCGA-KK-A8IB-11A.png
inst/extdata/vignetteplots/TCGA-KK-A8IK-01A.png
inst/extdata/vignetteplots/TCGA-V1-A9O5-01A.png
inst/extdata/vignetteplots/TCGA-V1-A9O7-01A.png
inst/extdata/vignetteplots/TCGA-V1-A9OF-01A.png
inst/extdata/vignetteplots/TCGA-VN-A88N-01A.png
inst/extdata/vignetteplots/TCGA-VP-A87D-01A.png
inst/extdata/vignetteplots/TCGA-XK-AAJA-01A.png
inst/extdata/vignetteplots/TCGA-XQ-A8TB-10A.png
inst/extdata/vignetteplots/TCGA-YL-A9WL-01A.png
inst/extdata/vignetteplots/TCGA-ZG-A9LM-01A.png
inst/extdata/vignetteplots/TCGA-ZG-A9N3-01A.png
man/checkBdev.Rd
man/checkSex.Rd
man/getLOY.Rd
man/getProb.Rd
man/getSamples.Rd
man/getSummary.Rd
man/madloy.Rd
man/plot.MADloy.Rd
man/plotIndLRR.Rd
man/plotIndSNP.Rd
man/plotIndSNPX.Rd
man/processBdevMAD.Rd
man/processMAD.Rd
vignettes/MADloy.bib
vignettes/MADloy_SNParray_vignette.Rmd
vignettes/MADloy_SNParray_vignette.html
