Files in isglobal-brge/MADloy
Package to detect mosaic LOY from SNP array data

.gitignore
DESCRIPTION
NAMESPACE
R/BLCAres.R R/MADloy.R R/MADloyHapMapAll.R R/MADloyHapMapMale.R R/MADseqLOY.R R/PRADres.R R/PRADresBdev.R R/checkBdev.R R/checkSex.R R/getLOY.R R/getProb.R R/getSummary.R R/plot.LOY.R R/plot.MADloy.R R/plot.MADloyBdev.R R/plot.MADseqLOY.R R/plotIndLRR.R R/plotIndNGS.R R/plotIndSNP.R R/plotNIG.R R/print.LOY.R R/print.MADloy.R R/print.MADloyBdev.R R/print.MADseqLOY.R R/processBam.R R/processBdevMAD.R R/processMAD.R R/read.targets.R R/utils.R README.md
data/BLCAres.rda
data/MADloyDataAll.rda
data/MADloyDataMale.rda
data/MADloyHapMapAll.rda
data/MADloyHapMapMale.rda
data/PRADres.rda
data/PRADresBdev.rda
inst/extdata/Rplot001.png
inst/extdata/TCGA-CF-A3MI-01A.txt
inst/extdata/TCGA-E7-A6ME-01A.txt
inst/extdata/data-raw/HapMap_SNP_Data.R inst/extdata/data-raw/HapMap_SNP_Data_2.R
inst/extdata/rawData/Sample1.txt
inst/extdata/rawData/Sample2.txt
inst/extdata/references/GRCh38.chrom.sizes
inst/extdata/references/GRCh38.par.regions
inst/extdata/references/hg18.chrom.sizes
inst/extdata/references/hg18.par.regions
inst/extdata/references/hg19.chrom.sizes
inst/extdata/references/hg19.par.regions
inst/extdata/vignetteplots/TCGA-G9-6329-01A.png
inst/extdata/vignetteplots/TCGA-G9-6362-01A.png
inst/extdata/vignetteplots/TCGA-G9-6362-11A.png
inst/extdata/vignetteplots/TCGA-G9-A9S7-01A.png
inst/extdata/vignetteplots/TCGA-HC-7740-01B.png
inst/extdata/vignetteplots/TCGA-HC-7742-10A.png
inst/extdata/vignetteplots/TCGA-HC-7747-10A.png
inst/extdata/vignetteplots/TCGA-HC-7752-10A.png
inst/extdata/vignetteplots/TCGA-HC-8258-01B.png
inst/extdata/vignetteplots/TCGA-HC-A9TE-01A.png
inst/extdata/vignetteplots/TCGA-J4-AATZ-01A.png
inst/extdata/vignetteplots/TCGA-J9-A52E-10A.png
inst/extdata/vignetteplots/TCGA-J9-A8CP-01A.png
inst/extdata/vignetteplots/TCGA-KK-A7B0-11A.png
inst/extdata/vignetteplots/TCGA-KK-A8IB-11A.png
inst/extdata/vignetteplots/TCGA-KK-A8IK-01A.png
inst/extdata/vignetteplots/TCGA-V1-A9O5-01A.png
inst/extdata/vignetteplots/TCGA-V1-A9O7-01A.png
inst/extdata/vignetteplots/TCGA-V1-A9OF-01A.png
inst/extdata/vignetteplots/TCGA-VN-A88N-01A.png
inst/extdata/vignetteplots/TCGA-VP-A87D-01A.png
inst/extdata/vignetteplots/TCGA-XK-AAJA-01A.png
inst/extdata/vignetteplots/TCGA-XQ-A8TB-10A.png
inst/extdata/vignetteplots/TCGA-YL-A9WL-01A.png
inst/extdata/vignetteplots/TCGA-ZG-A9LM-01A.png
inst/extdata/vignetteplots/TCGA-ZG-A9N3-01A.png
man/BLCAres.Rd man/MADloyHapMapAll.Rd man/MADloyHapMapMale.Rd man/PRADres.Rd man/PRADresBdev.Rd man/checkBdev.Rd man/checkSex.Rd man/getLOY.Rd man/getProb.Rd man/getSummary.Rd man/madloy.Rd man/madseqloy.Rd man/plotIndLRR.Rd man/plotIndSNP.Rd man/plotNIG.Rd man/processBdevMAD.Rd man/processMAD.Rd vignettes/MADloy_NGS_vignette.Rmd vignettes/MADloy_SNParray_Bdevcheck_vignette.Rmd vignettes/MADloy_SNParray_vignette.Rmd
vignettes/images/plot_res-1.png
vignettes/images/plot_resloy-1.png
vignettes/images/unnamed-chunk-2-1.png
vignettes/images/unnamed-chunk-3-1.png
isglobal-brge/MADloy documentation built on June 11, 2017, 2:40 a.m.