Man pages for isglobal-brge/MADloy
Package to detect mosaic LOY from SNP array data
| checkBdev | Check the B deviation values in PAR1 and PAR2 regions to... |
| checkSex | Check sex for SNP array samples |
| getLOY | Detection algorithm to detect Loss of Y events in MADloy data |
| getProb | Get probability matrix of three status (LOY, normal, XYY) |
| getSamples | Return the samples with the chosen classification |
| getSummary | Get summary values from a MADloy object |
| madloy | Check the mean LRR values in msY region to detect Loss of Y... |
| plotIndLRR | Plots the SNP LRR data of an individual |
| plotIndSNP | Plots the SNP data of chromosome Y for an individual |
| plotIndSNPX | Plots the SNP data of chromosome X for an individual |
| plot.MADloy | Plot of MADloy object |
| processBdevMAD | Process MAD file to obtain Bdev |
| processMAD | Process MAD file |
