ds.RNAseqPreproc: Filter Genes By Expression Level

In isglobal-brge/dsOmicsClient: DataSHIELD client site Omics association functions.

Filter Genes By Expression Level

Description

Determine which genes have sufficiently large counts to be retained in a statistical analysis. This is a similar function to edgeR::filterByExpr

Usage

ds.RNAseqPreproc(object, group = NULL, newobj.name = NULL, datasources = NULL)

Arguments

object	character Name of the eSet, RangedSummarizedExperiment on the server
group	character indicating the vector or factor giving group membership (optional).
newobj.name	character (default NULL) Name to be assigned on the server to the RangedSummarizedExperiment. If NULL the created RangedSummarizedExperiment will be assigned to a variable named 'rse.filter'
datasources	a list of DSConnection-class (default NULL) objects obtained after login

Value

This function does not have an output. It creates (or overwrites) a data frame on the study server.

isglobal-brge/dsOmicsClient documentation built on March 20, 2023, 3:52 p.m.