ds.snptest: Interface to run SNPtest commands on a ssh connection (with...

In isglobal-brge/dsOmicsClient: DataSHIELD client site Omics association functions.

Interface to run SNPtest commands on a ssh connection (with SNPtest 2.5.2 installed)

Description

Interface to run SNPtest commands on a ssh connection (with SNPtest 2.5.2 installed)

Usage

ds.snptest(client, snptest.arguments, datasources = NULL)

Arguments

client	character Name of the ssh resource on the server
snptest.arguments	character SNPtest arguments, the leading "snptest" and trailing "-o output.out" do not need to be provided, they are handled on the server side.
datasources	a list of DSConnection-class (default NULL) objects obtained after login

Value

List containing:
- Results: Table of results (typical SNPtest output file)
- Output: Console output of the ssh query

isglobal-brge/dsOmicsClient documentation built on March 20, 2023, 3:52 p.m.