ds.getSNPSbyGen: Subset GDS with gene(s)

In isglobal-brge/dsOmicsClient: DataSHIELD client site Omics association functions.

Subset GDS with gene(s)

Description

Subset a server side GDS with the SNPs from selected gene(s)

Usage

ds.getSNPSbyGen(gdsFile, genes, name = NULL, datasources = NULL)

Arguments

gdsFile	character Name of the GDS on the server
genes	character vector Name of the gene(s) to select (HGCN nomenclature)
name	character (default NULL) Name of the subsetted GDS, if NULL the name gds_subsetted will be used.
datasources	a list of DSConnection-class objects obtained after login.

Value

This function does not have an output. It creates (or overwrites) a GDS object on the study server.

isglobal-brge/dsOmicsClient documentation built on March 20, 2023, 3:52 p.m.