plotAllIso: Plot proportional exon expression

In isglobal-brge/rasp: Differential alternative splicing test.

Description

Plot proportional exon expression

Usage

plotAllIso(
  gene,
  data,
  group,
  gene_col = "gene_id",
  jitterWidth = 0,
  inds,
  isos
)

Arguments

gene	name of the gene to plot.
data	expression dataset. Can be of class 'DEXSeqDataSet', 'SummarizedExperiment' or 'RangedSummarizedExperiment'. A 'matrix' or 'data.frame' is also accepted.
group	a 'factor' representing the condition of each individual. Required if 'data' is a 'matrix' or 'data.fame', ignored otherwise.
gene_col	name of the column that contains the gene IDs.
jitterWidth	amount of graphical jitter to use in the plot.
inds	'character' or 'numeric' vector. Plot only the specified individuals (samples).
isos	'character' or 'numeric' vector. Plot only the specified exons.

Examples

data(adipose)
plotAllIso("ENSG00000003249.13", adipose.chr16, "inv16p11.2")

data(YRI)
plotAllIso("ENSG00000215915", YRI, attr(YRI, "gender"))

isglobal-brge/rasp documentation built on July 12, 2020, 1:17 a.m.