topGenes: Get the top ranking genes.

In isglobal-brge/rasp: Differential alternative splicing test.

Description

By default, 'topGenes' will return *and* print the 6 genes with best p-value.

Usage

topGenes(
  x,
  n = 6L,
  sort.by = "pvalue",
  pval.adjust.cutoff = 1,
  print = TRUE,
  ...
)

Arguments

x	object returned by 'rasp'.
n	number of top genes to return.
sort.by	column to be used as a sorting key.
pval.adjust.cutoff	return only genes with a 'padjust' value lower than this.
print	whether to print the output, in addition to only returning.
...	additional arguments passed to 'print.data.frame'.

Value

a 'data.frame'

isglobal-brge/rasp documentation built on July 12, 2020, 1:17 a.m.