plotTernary: Plot proportional exon expression

In isglobal-brge/rasp: Differential alternative splicing test.

Description

Plot proportional exon expression

Usage

plotTernary(x, gene, group, geneCol = 1, transCol = 2, transcripts, ...)

Arguments

x	expression dataset. Can be of class 'DEXSeqDataSet', 'SummarizedExperiment' or 'RangedSummarizedExperiment'. A 'matrix' or 'data.frame' is also accepted.
gene	name of the gene to plot.
group	a 'factor' representing the condition of each individual. Required if 'data' is a 'matrix' or 'data.fame', ignored otherwise.
geneCol	'character' or 'numeric' vector specifying the columns of 'x' with that contain the gene names. Required if 'x' is a 'matrix' or 'data.fame', ignored otherwise.
transCol	'character' or 'numeric' vector specifying the columns of 'x' with that contain the transcript names. Required if 'x' is a 'matrix' or 'data.fame', ignored otherwise.
transcripts	'numeric' vector of length 3 with the indices of the transcripts to ploth.

Examples

data(adipose)
plotTernary(adipose.chr16, "ENSG00000003249.13", transcripts = c(2, 4, 7))

data(YRI)
plotTernary(YRI, "ENSG00000160741")

isglobal-brge/rasp documentation built on July 12, 2020, 1:17 a.m.