Description Usage Arguments Examples
Plot proportional exon expression
1 | plotTernary(x, gene, group, geneCol = 1, transCol = 2, transcripts, ...)
|
x |
expression dataset. Can be of class 'DEXSeqDataSet', 'SummarizedExperiment' or 'RangedSummarizedExperiment'. A 'matrix' or 'data.frame' is also accepted. |
gene |
name of the gene to plot. |
group |
a 'factor' representing the condition of each individual. Required if 'data' is a 'matrix' or 'data.fame', ignored otherwise. |
geneCol |
'character' or 'numeric' vector specifying the columns of 'x' with that contain the gene names. Required if 'x' is a 'matrix' or 'data.fame', ignored otherwise. |
transCol |
'character' or 'numeric' vector specifying the columns of 'x' with that contain the transcript names. Required if 'x' is a 'matrix' or 'data.fame', ignored otherwise. |
transcripts |
'numeric' vector of length 3 with the indices of the transcripts to ploth. |
1 2 3 4 5 | data(adipose)
plotTernary(adipose.chr16, "ENSG00000003249.13", transcripts = c(2, 4, 7))
data(YRI)
plotTernary(YRI, "ENSG00000160741")
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