calculateAof: Average Overlap Frequency (AOF).

In ismmshimc/cytutils: Cytometry quality control and reproducibility utilities

Average Overlap Frequency (AOF).

Description

Calculate the Average Overlap Frequency (AOF) for a single cytometry channel.

Usage

calculateAof(x, pos_indices, neg_indices = setdiff(seq_along(x), pos_indices),
  width = 0.05, cofactor = NULL)

Arguments

x	Numeric vector corresponding to one channel in cytometry data. Data should be transformed. If not, entering a cofactor will result in data being transformed
pos_indices	Indices of cells positive for this channel.
neg_indices	Indices of cells negative for this channel.
width	Width of high threshold of negative population and low threshold of positive population.
cofactor	If supplied, data will be transformed using inverse hyperbolic sin with given cofactor.

Value

The AOF between positive and negative populations for x.

ismmshimc/cytutils documentation built on Aug. 26, 2022, 2:07 p.m.