channelRename: FCS channel renaming.

View source: R/channel_rename.R

channelRenameR Documentation

FCS channel renaming.

Description

A two-step utility for renaming FCS channel names and descriptions. This is useful for situations where channels were misnamed across acquisitions (for example, naming a channel CD8 in one sample and CD8a in another). See the Readme at "FCS Channel Renaming" for instructions.

Usage

channelRename(path, dup_handling = "message", verbose = TRUE)

Arguments

path

Directory where FCS files are located.

dup_handling

How to handle masses with duplicates name or desc. Options are "stop", "message", and NULL.

verbose

If TRUE, script will report progress to console.


ismmshimc/cytutils documentation built on Aug. 26, 2022, 2:07 p.m.