debarcoderPlots: Debarcoder diagnostic plots.

In ismmshimc/cytutils: Cytometry quality control and reproducibility utilities

Debarcoder diagnostic plots.

Description

Given an FCS file, generate several debarcoder diagnostic plots. These includea separate scatter plot of Mahalanobis ratio versus barcoding separation distance, Mahalanobis ratio distribution, and barcoding separation distance distribution.

Usage

debarcoderPlots(path_prefix, labels, key, exprs_list,
  unlabeled_label = "unlabeled")

Arguments

path_prefix	Either NULL (do not export figures) or prefix to path where files will be exported.
labels	Data frame with an event label column.
key	Barcoding key data frame.
exprs_list	A list with expression and sorted expression matrices.
unlabeled_label	Label for events that don't match any key codes.

Value

A list of ggplot objects corresponding to the figures.

ismmshimc/cytutils documentation built on Aug. 26, 2022, 2:07 p.m.