jbplot_hcxval: jbplot_hcxval

In jabbamodel/JABBA: Just Another Bayesian Biomass Assessment

jbplot_hcxval

Description

Plots and summarizes results from one step head hindcast cross-validation using the output form jabba_hindcast

Usage

jbplot_hcxval(
  hc,
  index = NULL,
  naive.min = 0.1,
  mase.adj = FALSE,
  output.dir = getwd(),
  as.png = FALSE,
  single.plots = add,
  add = FALSE,
  width = NULL,
  height = NULL,
  minyr = NULL,
  cols = NULL,
  legend.loc = "topright",
  legend.cex = 0.7,
  legend.add = TRUE,
  label.add = TRUE,
  label.cex = 0.9,
  verbose = TRUE,
  ymax = 1
)

Arguments

hc	output object from jabba_hindcast
index	option to plot specific indices (numeric & in order)
naive.min	minimum MASE denominator (naive predictions) for dj (default = 0.1)
mase.adj	if TRUE, show adjusted mase in brackets
output.dir	directory to save plots
as.png	save as png file of TRUE
single.plots	if TRUE plot invidual fits else make multiplot
add	if TRUE plots par is only called for first plot
width	plot width
height	plot hight
minyr	minimum year shown in plot
cols	option to add colour palette
legend.loc	location of legend
legend.cex	size of legend
legend.add	show legend
label.add	show index name and MASE
label.cex	label siz
verbose	if FALSE then silent
ymax	upper ylim scaler

Value

hcxval statistics by index: MASE, MAE.PR predition residuals,MAE.base for random walk, n.eval obs evaluated

jabbamodel/JABBA documentation built on Nov. 2, 2024, 12:50 p.m.