jbplot_mcmc: Plot mcmc chains

In jabbamodel/JABBA: Just Another Bayesian Biomass Assessment

Plot mcmc chains

Description

MCMC chains of esimated parameters: K, r, m (shape), psi (depletion) and variances

Usage

jbplot_mcmc(
  jabba,
  output.dir = getwd(),
  as.png = FALSE,
  mfrow = c(round((ncol(jabba$pars_posterior))/3 + 0.33, 0), 3),
  width = 8,
  height = 2.5 * round(jabba$pars_posterior/3, 0),
  verbose = TRUE
)

Arguments

jabba	output list from fit_jabba
output.dir	directory to save plots
as.png	save as png file of TRUE
mfrow	set up plot frame
width	plot width
height	plot hight
verbose	silent option
add	if true don't call par() to allow construction of multiplots

jabbamodel/JABBA documentation built on Nov. 2, 2024, 12:50 p.m.