jbplot_runstest: JABBA runs test plots

In jabbamodel/JABBA: Just Another Bayesian Biomass Assessment

JABBA runs test plots

Description

Residual diagnostics with runs test p-value and 3xsigma limits

Usage

jbplot_runstest(
  jabba,
  index = NULL,
  mixing = "less",
  output.dir = getwd(),
  add = FALSE,
  as.png = FALSE,
  single.plots = add,
  width = NULL,
  height = NULL,
  verbose = TRUE
)

Arguments

jabba	output list from fit_jabba
index	option to plot specific indices (numeric & in order)
mixing	c("less","greater","two.sided"). Default "less" is checking for positive autocorrelation only
output.dir	directory to save plots
add	if true par() is surpressed within the plot function
as.png	save as png file of TRUE
single.plots	if TRUE plot invidual fits else make multiplot
width	plot width
height	plot hight
verbose	silent option

Examples

data(iccat)
bet= iccat$bet
jb = build_jabba(catch=bet$catch,cpue=bet$cpue,se=bet$se,assessment="BET",scenario = "Ref",model.type = "Pella",igamma = c(0.001,0.001),verbose=FALSE)
fit = fit_jabba(jb,quickmcmc=TRUE,verbose=FALSE)
jbrunstest(fit)
jbrunstest(fit,index=2)
jbplot_runstest(fit,verbose=FALSE)

jabbamodel/JABBA documentation built on Nov. 2, 2024, 12:50 p.m.