jbplot_ppdist: Plot of prior and posterior distributions

In jabbamodel/JABBA: Just Another Bayesian Biomass Assessment

Plot of prior and posterior distributions

Description

Prior and posterior distributions of esimated parameters: K, r, psi (depletion) and variances

Usage

jbplot_ppdist(
  jabba,
  output.dir = getwd(),
  as.png = FALSE,
  mfrow = c(round((ncol(jabba$pars_posterior))/3 + 0.33, 0), 3),
  width = 8,
  height = 2.5 * round(ncol(jabba$pars_posterior)/3, 0),
  cex = 0.8,
  verbose = TRUE,
  addPP = TRUE
)

Arguments

jabba	output list from fit_jabba
output.dir	directory to save plots
as.png	save as png file of TRUE
mfrow	set up plot frame
width	plot width
height	plot hight
verbose	silent option
addPP	show PPMR and PPVR
add	if true don't call par() to allow construction of multiplots

jabbamodel/JABBA documentation built on Nov. 2, 2024, 12:50 p.m.