jbplot_summary: jbplot_summary()

In jabbamodel/JABBA: Just Another Bayesian Biomass Assessment

jbplot_summary()

Description

Compares B, F, BBmsy, FFmsy, BB0 and SP for various model scanarios that have to be saved as rdata

Usage

jbplot_summary(
  jabbas,
  type = c("B", "F", "BBmsy", "FFmsy", "BB0", "SP"),
  plotCIs = TRUE,
  ylabs = NULL,
  prefix = "Summary",
  save.summary = FALSE,
  output.dir = getwd(),
  as.png = FALSE,
  single.plots = add,
  add = FALSE,
  width = NULL,
  height = NULL,
  xlim = NULL,
  cols = NULL,
  legend.loc = "topright",
  legend.cex = 0.8,
  legend.add = TRUE,
  plot.cex = 0.8,
  verbose = TRUE
)

Arguments

jabbas	list() of JABBA model 1:n
type	for single plots optional select type=c("B","F","BBmsy","FFmsy","BB0","SP")
plotCIs	Plot Credibilty Interval
ylabs	yaxis labels for quants
prefix	Plot name specifier
save.summary	option to save a summary of all loaded model runs
output.dir	directory to save plots
as.png	save as png file of TRUE
single.plots	if TRUE plot invidual fits else make multiplot
add	adds single plots to mfrow set up
width	plot width
height	plot hight
xlim	allows to "zoom-in" requires speficiation xlim=c(first.yr,last.yr)
cols	option to add colour palette
legend.loc	location of legend
legend.cex	size of legend
legend.add	show legend
plot.cex	cex setting in par()
verbose	if FALSE be silent

jabbamodel/JABBA documentation built on Nov. 2, 2024, 12:50 p.m.