README.md

In jacobkimmel/hmR: Heteromotility Data Analysis

hmR

hmR is an R package to analyze heteromotility data. The semantics of hmR are inspired by Seurat.

Installation

require(devtools)
install_github('jacobkimmel/hmR')

Usage

hmR semantics focus on a heteromotility data set object, initialized from raw cell behavior feature data extracted using heteromotility.

library(hmR)

df = read.csv('path/to/motility_statistics.csv')
mot = hmMakeObject(raw.data=df)

# Perform hierarchical clustering
mot = hmHClust(mot, k = 3, method='ward.D2')

# Run and plot PCA
mot = hmPCA(mot)
mot = hmPlotPCA(mot)

# Run and plot tSNE
mot = hmTSNE(mot)
mot = hmPlotTSNE

# etc.

jacobkimmel/hmR documentation built on Jan. 6, 2020, 12:44 a.m.