hmHClust: Performs hierarchical clustering and sets 'meta.data$clust'...

In jacobkimmel/hmR: Heteromotility Data Analysis

Description

Performs hierarchical clustering and sets 'meta.data$clust' in 'hm'

Usage

hmHClust(hm, k = 2, linkage = "ward.D2", dist_method = "euclidean",
  scalar = "data")

Arguments

hm	: 'heteromtility' data object.
k	: integer. number of clusters to set with 'cutree()'.
linkage	: character. method for hierarchical clustering, compatible with 'hclust()'.
dist_method	: character. method for distance matrix calculation, compatible with 'dist()'.
scalar	: character. scalar data space to use. ['data', 'unscaled.data', 'pcs'].

Value

hm : 'heteromtility' data object. adds 'clust' variable to '@meta.data'

jacobkimmel/hmR documentation built on Jan. 6, 2020, 12:44 a.m.