hmPlotPseudotime: Plots monocle pseudotiming

In jacobkimmel/hmR: Heteromotility Data Analysis

Description

Plots monocle pseudotiming

Usage

hmPlotPseudotime(hm, class = "State", show_state_number = F,
  rev_x_axis = F, save = NULL, width = 4, height = 4)

Arguments

hm	: 'heteromotility' object containing @celldataset trajectory data.
class	: character. feature in FeatureData to color by.
show_state_number	: boolean. show state numbers on pseudotiming plot.
rev_x_axis	: boolean. reverse the order of the pseudotiming x-axis.
save	: character. path to file for saving.
width	: integer. Width of plots in inches.
height	: integer. Height of plots in inches.

Value

pl : ggplot2 object.

jacobkimmel/hmR documentation built on Jan. 6, 2020, 12:44 a.m.