Man pages for jakejh/metapredict
Meta-analysis of gene expression using the elastic net
| calcConfusionCv | Calculate confusion matrix for cross-validation. |
| calcConfusionValidation | Calculate confusion matrices (or matrix) for validation... |
| downloadCustomCdfMappings | Download custom CDF mapping files from Brainarray. |
| extractExpressionData | Extract the expression matrices containing the desired... |
| getStudyData | Get the gene expression data for one study. |
| getStudyDataList | Get the gene expression data for multiple studies. |
| getSupportedPlatforms | Get the GPLs for microarray platforms that are currently... |
| getUnsupportedPlatforms | Get the GPLs for unsupported microarray platforms. |
| installCustomCdfPackages | Install custom CDF packages from Brainarray. |
| makeCoefDt | Make data.table of non-zero coefficients from a glmnet model. |
| makeGlmnetArgs | Make arguments for glmnet. |
| mergeMatchStudyData | Merge gene expression from different platforms that was... |
| mergeStudyData | Merge gene expression data from multiple studies. |
| metapredict | Predict the response variable in validation datasets. |
| metapredictCv | Perform cross-validation of merged gene expression data. |
| plotClassProbsCv | Plot class probabilities for samples from cross-validation. |
| plotClassProbsValidation | Plot class probabilities for samples from multiple validation... |
| plotCoefficients | Plot coefficients for a gene expression meta-analysis. |
| plotExpressionHeatmap | Plot heatmap of merged gene expression data. |
