mergeMatchStudyData: Merge gene expression from different platforms that was...

In jakejh/metapredict: Meta-analysis of gene expression using the elastic net

Merge gene expression from different platforms that was measured on the same biological samples.

Description

Merge gene expression from different platforms that was measured on the same biological samples.

Usage

mergeMatchStudyData(
  ematAtomicList,
  studyMetadataAtomic,
  matchStudyColname,
  sampleMetadataAtomic,
  matchSampleColname,
  mergeFunc = function(x) mean(x, na.rm = TRUE)
)

Arguments

ematAtomicList	list of expression matrices.
studyMetadataAtomic	data frame for study metadata.
matchStudyColname	column in studyMetadataAtomic used to match studies.
sampleMetadataAtomic	data frame for sample metadata.
matchSampleColname	column in sampleMetadataAtomic used to match samples.
mergeFunc	function to summarize multiple gene expression values.

Value

A named list.

ematList	Named list of expression matrices.
studyMetadata	data.frame of study metadata.
sampleMetadata	data.frame of sample metadata.

jakejh/metapredict documentation built on Feb. 14, 2023, 7:53 p.m.