Files in jakejh/metapredict
Meta-analysis of gene expression using the elastic net
.Rbuildignore
.github/workflows/check-deploy.yaml
.github/workflows/lint.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/metapredict_confusion.R
R/metapredict_merge.R
R/metapredict_plot.R
R/metapredict_predict.R
R/metapredict_process.R
R/metapredict_utils.R
README.md
_pkgdown.yml
codecov.yml
inst/extdata/sample_metadata.csv
inst/extdata/study_metadata.csv
inst/extdata/supported_platforms.csv
man/calcConfusionCv.Rd
man/calcConfusionValidation.Rd
man/downloadCustomCdfMappings.Rd
man/extractExpressionData.Rd
man/getStudyData.Rd
man/getStudyDataList.Rd
man/getSupportedPlatforms.Rd
man/getUnsupportedPlatforms.Rd
man/installCustomCdfPackages.Rd
man/makeCoefDt.Rd
man/makeGlmnetArgs.Rd
man/mergeMatchStudyData.Rd
man/mergeStudyData.Rd
man/metapredict.Rd
man/metapredictCv.Rd
man/plotClassProbsCv.Rd
man/plotClassProbsValidation.Rd
man/plotCoefficients.Rd
man/plotExpressionHeatmap.Rd
metapredict.Rproj
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test_data/Bhattacharjee/CL2001031606AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001031607AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001031608AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001031611AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001031620AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001031621AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001032121AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001032122AA.CEL.gz
tests/testthat/test_data/Bhattacharjee/CL2001032217AA.CEL.gz
tests/testthat/test_data/GSE11969_series_matrix.txt.gz
tests/testthat/test_data/GSE29016_series_matrix.txt.gz
tests/testthat/test_data/GSE30219/GSM748053.CEL.gz
tests/testthat/test_data/GSE30219/GSM748054.CEL.gz
tests/testthat/test_data/GSE30219/GSM748055.CEL.gz
tests/testthat/test_data/GSE30219/GSM748056.CEL.gz
tests/testthat/test_data/GSE30219/GSM748209.CEL.gz
tests/testthat/test_data/calcConfusionValidation.rds
tests/testthat/test_data/calcConfusionValidationEachFalse.rds
tests/testthat/test_data/cvFitList.rds
tests/testthat/test_data/ematDiscovery.rds
tests/testthat/test_data/ematList.rds
tests/testthat/test_data/esetList.rds
tests/testthat/test_data/glmnetArgs.rds
tests/testthat/test_data/plotClassProbsValidation.rds
tests/testthat/test_data/plotCoefficients.rds
tests/testthat/test_data/plotExpressionHeatmap.rds
tests/testthat/test_data/predsList.rds
tests/testthat/test_data/sample_metadata.csv
tests/testthat/test_data/study_metadata.csv
tests/testthat/test_data/supportedPlatforms.csv
tests/testthat/test_metapredict_confusion.R
tests/testthat/test_metapredict_plot.R
tests/testthat/test_metapredict_predict.R
tests/testthat/test_metapredict_process.R
vignettes/guide.Rmd
vignettes/prepare_example.Rmd
vignettes/run_example.Rmd
