calculate_seq_prob: function computes probability of given sequence

In jakubkala/QuiPTsim:

Description

function computes probability of given sequence

Usage

calculate_seq_prob(mc, seq)

Arguments

mc	markovchain object containing transition matrix
seq	sequence of alphabet elements

Examples

alphabet <- letters[1:4]
sequences <- matrix(sample(alphabet, size = 50, replace=TRUE), nrow = 5, ncol = 10)
mc <- sequenceTransitionMatrix(sequences, alphabet)
example_seq <- sample(alphabet, size = 5, replace = TRUE)
print(example_seq)
calculate_seq_prob(mc, example_seq)

jakubkala/QuiPTsim documentation built on Jan. 17, 2022, 11:27 p.m.