filter_nonrankings_exp3: function that evaluates nonranking methods

Description Usage Arguments

View source: R/benchmark_ranking.R

Description

function that evaluates nonranking methods

Usage

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filter_nonrankings_exp3(
  paths,
  num_reps,
  num_matrices_to_rbind,
  output_prefix,
  feature_selection_method,
  n,
  fraction,
  validation_scheme,
  thresholds = NULL
)

Arguments

paths

list of paths containing n-gram matrices

num_reps

number of repetitions of an experiment

num_matrices_to_rbind

number of matrices to bind in order to perform exp III correctly

output_prefix

output files directory

feature_selection_method

filter (e.g. QuiPT)

n

number of total sequences

fraction

fraction of positive examples

validation_scheme

list with ranking details

thresholds

p-value thresholds for statistical tests


jakubkala/QuiPTsim documentation built on Jan. 17, 2022, 11:27 p.m.