simulate_sequences: function generates sequences (both positive & negative)

In jakubkala/QuiPTsim:

Description

function generates sequences (both positive & negative)

Usage

simulate_sequences(
  n_seq,
  len,
  alphabet,
  motifs_list,
  n_motifs,
  fraction = 0.5,
  seqProbs = NULL
)

Arguments

n_seq	number of sequences to be generated
len	sequence length
alphabet	elements used to build sequence
motifs_list	list of injected motifs
n_motifs	number of motifs injected to each positive sequence
fraction	of positive sequences
seqProbs	alphabet probabilites for sequences

Value

generated sequences

Examples

n_seq <- 20
len <- 10
alph <- 1L:4
motifs <- generate_motifs(alph, 3)
simulate_sequences(n_seq, len, alph, motifs, 1)
simulate_sequences(n_seq, len, alph, motifs, 1, fraction = 0.8)
simulate_sequences(n_seq, len, alph, motifs, 1, seqProbs = c(0.7, 0.1, 0.1, 0.1))

jakubkala/QuiPTsim documentation built on Jan. 17, 2022, 11:27 p.m.