Files in jamesdalg/HiCNV
A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/GRanges_to_underscored_pos.R R/HiCNVserver.R R/averageMatrixEdges.R R/calcCNVKernelProbDist.R R/calcVecLMs.R R/createChromosomalMatrixSet.R R/downsample_genomic_matrix.R R/extractNegLogPval.R R/formSampleMatrixFromRawGDCData.R R/freadGDCfile.R R/getAnnotationMatrix.R R/getAsymmetricBlockIndices.R R/getBlockAverageMatrixFromBreakpoints.R R/getGlobalRescalingStats.R R/getInterchromosomalInteractivePlot.R R/importBreakpointBed.R R/mathead.R R/nbl_result_matrix_sign_small.R R/postProcessLinRegMatrix.R R/rebinGenomicInteractions.R R/runHiCNVShiny.R R/signedRescale.R R/underscored_pos_to_GRanges.R R/writeAsymmetricMeltedMatrixToDisk.R R/writeMeltedChromosomalMatrixToDisk.R
data/nbl_result_matrix_sign_small.rda
hicnv.Rproj
inst/doc/create_input_matrix.R inst/doc/create_input_matrix.Rmd
inst/doc/create_input_matrix.html
inst/doc/create_output_matrix.R inst/doc/create_output_matrix.Rmd
inst/doc/create_output_matrix.html
inst/extdata/ensembl_gene_tx_table_prot.rda
inst/extdata/nbl_result_matrix_sign_small.rda
inst/extdata/nbl_result_matrix_small.rds
inst/extdata/sample_breakpoints.bed
inst/extdata/sample_breakpoints_chr1.bed
inst/extdata/somaticCnvSegmentsDiploidBeta_TARGET-30-PANRVJ_NormalVsPrimary.tsv
man/GRanges_to_underscored_pos.Rd man/HiCNVserver.Rd man/averageMatrixEdges.Rd man/calcCNVKernelProbDist.Rd man/calcVecLMs.Rd man/createChromosomalMatrixSet.Rd man/downsample_genomic_matrix.Rd man/extractNegLogPval.Rd man/formSampleMatrixFromRawGDCData.Rd man/freadGDCfile.Rd man/getAnnotationMatrix.Rd man/getAsymmetricBlockIndices.Rd man/getBlockAverageMatrixFromBreakpoints.Rd man/getGlobalRescalingStats.Rd man/getInterchromosomalInteractivePlot.Rd man/importBreakpointBed.Rd man/mathead.Rd man/nbl_result_matrix_sign_small.Rd man/postProcessLinRegMatrix.Rd man/rebinGenomicInteractions.Rd man/runHiCNVShiny.Rd man/signedRescale.Rd man/underscored_pos_to_GRanges.Rd man/writeAsymmetricMeltedChromosomalMatrixToDisk.Rd man/writeMeltedChromosomalMatrixToDisk.Rd
vignettes/NBL_data_files.png
vignettes/NBL_sample_matched_input_matrix.rds
vignettes/create_input_matrix.Rmd vignettes/create_output_matrix.Rmd
vignettes/download_from_cart.png
vignettes/interchromosomal_view.png
vignettes/nbl_result_matrix_small.rds
vignettes/nbl_slurm_object_test_zero_removed.rds
jamesdalg/HiCNV documentation built on Oct. 21, 2018, 9:12 a.m.