getAnnotationMatrix: Get the genes in the genomic ranges indicated by the row and...
In jamesdalg/HiCNV: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization
Description
Usage
Arguments
Value
Examples
Description
Gets the genes in the ranges within each cell of the matrix.
Usage
1
2
getAnnotationMatrix(genomic_matrix, prot_only = T, sequential = F,
flip_row_col = F)
Arguments
genomic_matrix
A matrix with row and column names of the format chr1_100_200 (chr,start,end)
prot_only
Inlcude only the protein coding genes from ensembl?
sequential
Turn off parallelism with doParallel?
flip_row_col
Give column genes along the rows and row genes down columns?
Value
concatenated_gene_matrix A matrix with row and column genes
Examples
1
2
3
load(system.file("extdata","nbl_result_matrix_sign_small.rda",package = "HiCNV"))
load(system.file("extdata","ensembl_gene_tx_table_prot.rda",package = "HiCNV"))
getAnnotationMatrix(nbl_result_matrix_sign_small,sequential=TRUE)
jamesdalg/HiCNV documentation built on May 9, 2019, 5:05 a.m.
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Description Usage Arguments Value Examples
Description
Gets the genes in the ranges within each cell of the matrix.
Usage
1 2 | getAnnotationMatrix(genomic_matrix, prot_only = T, sequential = F,
flip_row_col = F)
|
Arguments
genomic_matrix |
A matrix with row and column names of the format chr1_100_200 (chr,start,end) |
prot_only |
Inlcude only the protein coding genes from ensembl? |
sequential |
Turn off parallelism with doParallel? |
flip_row_col |
Give column genes along the rows and row genes down columns? |
Value
concatenated_gene_matrix A matrix with row and column genes
Examples
1 2 3 | load(system.file("extdata","nbl_result_matrix_sign_small.rda",package = "HiCNV"))
load(system.file("extdata","ensembl_gene_tx_table_prot.rda",package = "HiCNV"))
getAnnotationMatrix(nbl_result_matrix_sign_small,sequential=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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