freadGDCfile: Read GDC segmentation datafile for low-pass sequencing data.

In jamesdalg/HiCNV: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

Description

Reads a GDC segmetnation file and extract the segmetnation data.

Usage

freadGDCfile(file, fread_skip = 14)

Arguments

file	GDC file to be read
fread_skip	The number of metadata lines to be skipped(typically 14)..

Value

input_tsv_with_sample_info A data frame containing the sample information extracted from the filename, including sample name & comparison type.

Examples

freadGDCfile(file =
system.file("extdata","somaticCnvSegmentsDiploidBeta_TARGET-30-PANRVJ_NormalVsPrimary.tsv",
package = "HiCNV"))

jamesdalg/HiCNV documentation built on May 9, 2019, 5:05 a.m.